Transcript: ENSDART00000153313.2 CDC42BPA-202

Description

CDC42 binding protein kinase alpha (DMPK-like) b [Source:ZFIN;Acc:ZDB-GENE-080219-17]

Location

About this transcript

This transcript has 2 exons, is associated with 326 variant alleles and maps to 9 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000040456.9	CDC42BPA-201	8191	1716aa	ENSDARP00000040455.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5TZ37	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000114262.2	CDC42BPA-203	1949	306aa	ENSDARP00000103136.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000153313.2	CDC42BPA-202	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 540 bps,

Version

ENSDART00000153313.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.