Transcript: ENSDART00000153273.2 gpcpd1-203

Description

glycerophosphocholine phosphodiesterase 1 [Source:ZFIN;Acc:ZDB-GENE-060503-472]

Gene Synonyms

si:rp71-81o21.1, zgc:103717

Location

About this transcript

This transcript has 3 exons, is associated with 577 variant alleles and maps to 85 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000027482.10	gpcpd1-201	2366	666aa	ENSDARP00000011048.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LVM1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000124283.3	gpcpd1-202	2001	666aa	ENSDARP00000107604.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LVM1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000153273.2	gpcpd1-203	345	18aa	ENSDARP00000127231.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3JAG3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 345 bps, Translation length: 18 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000153273.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.