Transcript: ENSDART00000153266.2 ITSN2-202

Description

intersectin 2a [Source:ZFIN;Acc:ZDB-GENE-041014-84]

Location

Chromosome 20: 25,359,064-25,436,389 reverse strand.

About this transcript

This transcript has 39 exons, is annotated with 92 domains and features, is associated with 1570 variant alleles and maps to 310 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000000161.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000062780.7	ITSN2-203	5052	1665aa	ENSDARP00000062779.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000153266.2	ITSN2-202	5204	1639aa	ENSDARP00000127139.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3JA74	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000180278.1	ITSN2-204	1599	513aa	ENSDARP00000148484.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000125142.3	ITSN2-201	611	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 39, Coding exons: 38, Transcript length: 5,204 bps, Translation length: 1,639 residues

Version

ENSDART00000153266.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000153266.2 ITSN2-202

Summary

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Transcript: ENSDART00000153266.2 ITSN2-202

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