Transcript: ENSDART00000153128.2 hmcn1-203

Description

hemicentin 1 [Source:ZFIN;Acc:ZDB-GENE-041014-322]

Gene Synonyms

nag, nagel, nel, si:ch211-169j21.3

Location

Chromosome 20: 34,158,924-34,164,278 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 28 domains and features, is associated with 327 variant alleles and maps to 189 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000016936.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000020389.7	hmcn1-201	16851	5616aa	ENSDARP00000005919.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QVQ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000144705.5	hmcn1-202	18491	5614aa	ENSDARP00000119972.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R7R3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000153128.2	hmcn1-203	560	186aa	ENSDARP00000127329.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3JAR0	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 560 bps, Translation length: 186 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000153128.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000153128.2 hmcn1-203

Summary

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Transcript: ENSDART00000153128.2 hmcn1-203

Summary

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