Transcript: ENSDART00000152957.2 stxbp4-202

Description

syntaxin binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-110420-5]

Location

About this transcript

This transcript has 3 exons, is associated with 277 variant alleles and maps to 28 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000153245.3	stxbp4-203	3145	749aa	ENSDARP00000127256.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3JAI8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000152924.3	stxbp4-201	950	278aa	ENSDARP00000127135.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3JA70	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000153268.3	stxbp4-204	668	149aa	ENSDARP00000127341.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3JAS2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152957.2	stxbp4-202	540	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 540 bps,

Version

ENSDART00000152957.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.