Transcript: ENSDART00000152842.2 syne1a-202

Description

spectrin repeat containing, nuclear envelope 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4172]

Gene Synonyms

si:ch211-225l4.1, si:ch211-87a14.2, wu:fc76h10

Location

About this transcript

This transcript has 6 exons, is annotated with 11 domains and features, is associated with 238 variant alleles and maps to 19 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000139350.4	syne1a-201	26957	8697aa	ENSDARP00000118057.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QC38	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000152842.2	syne1a-202	838	279aa	ENSDARP00000127449.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	U3JB27	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 838 bps, Translation length: 279 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000152842.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.