Transcript: ENSDART00000152828.3 FAM20B-201

Description

FAM20B glycosaminoglycan xylosylkinase [Source:ZFIN;Acc:ZDB-GENE-040724-125]

Location

Chromosome 20: 15,911,801-15,922,410 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 8 domains and features, is associated with 508 variant alleles and maps to 45 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000008573.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000013453.10	FAM20B-205	2221	409aa	ENSDARP00000018976.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RH51	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000189421.1	FAM20B-206	2045	409aa	ENSDARP00000146564.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RH51	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000152354.2	FAM20B-204	827	153aa	ENSDARP00000126968.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152828.3	FAM20B-201	764	124aa	ENSDARP00000126637.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152357.3	FAM20B-203	683	105aa	ENSDARP00000126917.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152412.2	FAM20B-202	682	119aa	ENSDARP00000126738.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 764 bps, Translation length: 124 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000152828.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000152828.3 FAM20B-201

Summary

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Transcript: ENSDART00000152828.3 FAM20B-201

Summary

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