Transcript: ENSDART00000152495.3 map3k5-204

Description

mitogen-activated protein kinase kinase kinase 5 [Source:ZFIN;Acc:ZDB-GENE-030827-3]

Gene Synonyms

Ask1

Location

Chromosome 20: 3,005,472-3,087,162 reverse strand.

About this transcript

This transcript has 29 exons, is annotated with 25 domains and features, is associated with 2586 variant alleles and maps to 194 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000005416.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000046641.9	map3k5-201	4095	1364aa	ENSDARP00000046640.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F2L3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000152495.3	map3k5-204	5774	1356aa	ENSDARP00000126631.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GDS5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000152278.2	map3k5-202	930	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000152461.2	map3k5-203	730	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 29, Coding exons: 29, Transcript length: 5,774 bps, Translation length: 1,356 residues

Version

ENSDART00000152495.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000152495.3 map3k5-204

Summary

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Transcript: ENSDART00000152495.3 map3k5-204

Summary

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