Transcript: ENSDART00000152464.3 zgc:172106-203

Description

zgc:172106 [Source:ZFIN;Acc:ZDB-GENE-080204-42]

Location

About this transcript

This transcript has 9 exons, is annotated with 33 domains and features, is associated with 193 variant alleles and maps to 103 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000152464.3	zgc:172106-203	2068	396aa	ENSDARP00000126870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GEF7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000128979.3	zgc:172106-201	1626	359aa	ENSDARP00000111517.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A8WG06	-
ENSDART00000152262.2	zgc:172106-202	477	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000152809.2	zgc:172106-204	305	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,068 bps, Translation length: 396 residues

Version

ENSDART00000152464.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.