Transcript: ENSDART00000152447.3 hrc-203

Description

histidine rich calcium binding protein [Source:ZFIN;Acc:ZDB-GENE-041008-189]

Gene Synonyms

HRC, im:7139860, si:ch211-173d10.1, si:ch211-173d10.3, trpm4b3

Location

Chromosome 12: 4,398,093-4,408,828 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 12 domains and features, is associated with 58 variant alleles and maps to 21 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000063347.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000159007.2	hrc-204	3680	1225aa	ENSDARP00000140015.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	S5TZ97	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000152314.2	hrc-202	1307	435aa	ENSDARP00000126648.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GDU1	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000152447.3	hrc-203	1252	417aa	ENSDARP00000127011.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GEU8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,252 bps, Translation length: 417 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000152447.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000152447.3 hrc-203

Summary

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Transcript: ENSDART00000152447.3 hrc-203

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