Transcript: ENSDART00000152360.2 ca15b-201

Description

carbonic anhydrase XVb [Source:ZFIN;Acc:ZDB-GENE-040426-2222]

Location

Chromosome 12: 4,295,549-4,298,284 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 228 variant alleles and maps to 43 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000040510.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000152521.3	ca15b-203	1686	320aa	ENSDARP00000126698.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GDY8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000152377.2	ca15b-202	660	163aa	ENSDARP00000126700.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152557.3	ca15b-204	614	40aa	ENSDARP00000126638.1	Nonsense mediated decay	-	-
ENSDART00000152360.2	ca15b-201	507	54aa	ENSDARP00000126736.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000152642.3	ca15b-206	766	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000152637.3	ca15b-205	630	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 507 bps, Translation length: 54 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000152360.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000152360.2 ca15b-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000152360.2 ca15b-201

Summary

About Us

Get help

Our sister sites

Follow us