Transcript: ENSDART00000152322.2 pcdh15b-202

Description

protocadherin-related 15b [Source:ZFIN;Acc:ZDB-GENE-050214-1]

Location

About this transcript

This transcript has 2 exons, is annotated with 1 domain and feature, is associated with 221 variant alleles and maps to 1 oligo probe.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000171846.2	pcdh15b-203	5724	1907aa	ENSDARP00000141906.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IZF0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000106391.6	pcdh15b-201	5636	1848aa	ENSDARP00000097169.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QVE2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000152322.2	pcdh15b-202	324	32aa	ENSDARP00000126943.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GEN0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 324 bps, Translation length: 32 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000152322.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.