Transcript: ENSDART00000152269.2 SYNCRIP-206

Description

synaptotagmin binding, cytoplasmic RNA interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-4862]

Location

Chromosome 20: 2,739,531-2,745,385 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 12 domains and features, is associated with 233 variant alleles and maps to 30 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000040184.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000058779.6	SYNCRIP-201	2737	630aa	ENSDARP00000058778.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6NUZ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000152269.2	SYNCRIP-206	2185	225aa	ENSDARP00000127085.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000129870.3	SYNCRIP-209	1899	632aa	ENSDARP00000105632.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000132186.2	SYNCRIP-202	990	238aa	ENSDARP00000118608.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152135.2	SYNCRIP-208	916	39aa	ENSDARP00000126862.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000152655.2	SYNCRIP-207	824	202aa	ENSDARP00000126775.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000152727.2	SYNCRIP-203	739	71aa	ENSDARP00000127064.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000152697.2	SYNCRIP-204	459	48aa	ENSDARP00000126603.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000133881.2	SYNCRIP-205	597	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 2,185 bps, Translation length: 225 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000152269.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000152269.2 SYNCRIP-206

Summary

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Transcript: ENSDART00000152269.2 SYNCRIP-206

Summary

About Us

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