Transcript: ENSDART00000152121.3 si:ch211-286b5.4-201

Description

si:ch211-286b5.4 [Source:ZFIN;Acc:ZDB-GENE-121214-140]

Location

Chromosome 1: 55,254,291-55,261,589 reverse strand.

About this transcript

This transcript has 9 exons, is associated with 507 variant alleles and maps to 59 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000089765.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000152687.3	si:ch211-286b5.4-204	1485	427aa	ENSDARP00000126763.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EYN2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000152504.3	si:ch211-286b5.4-203	881	210aa	ENSDARP00000126770.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GE57	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152769.2	si:ch211-286b5.4-205	825	233aa	ENSDARP00000126665.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GDV8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152121.3	si:ch211-286b5.4-201	947	127aa	ENSDARP00000126980.1	Nonsense mediated decay	R4GER7	-
ENSDART00000152282.2	si:ch211-286b5.4-202	529	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 5, Transcript length: 947 bps, Translation length: 127 residues

Version

ENSDART00000152121.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000152121.3 si:ch211-286b5.4-201

Summary

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Transcript: ENSDART00000152121.3 si:ch211-286b5.4-201

Summary

About Us

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