Transcript: ENSDART00000152008.2 mthfd1b-203

Description

methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1b [Source:ZFIN;Acc:ZDB-GENE-020905-4]

Gene Synonyms

cb325, fc29f07, formyltetrahydrofolate synthetase, methenyltetrahydrofolate cyclohydrolase, mthfd1, wu:fc29f07

Location

About this transcript

This transcript has 3 exons, is associated with 328 variant alleles and maps to 9 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000021950.10	mthfd1b-201	3134	934aa	ENSDARP00000020770.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QXP5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000152100.2	mthfd1b-204	349	73aa	ENSDARP00000126431.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7DYA3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152008.2	mthfd1b-203	332	32aa	ENSDARP00000126462.1	Nonsense mediated decay	K7DYD3	-
ENSDART00000151971.2	mthfd1b-202	487	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 332 bps, Translation length: 32 residues

Version

ENSDART00000152008.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.