Transcript: ENSDART00000151915.2 ptchd1-201

Description

patched domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-061220-1]

Location

About this transcript

This transcript has 4 exons, is annotated with 25 domains and features, is associated with 206 variant alleles and maps to 155 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000186814.1	ptchd1-202	7468	887aa	ENSDARP00000153962.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7DYL5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000151915.2	ptchd1-201	5427	887aa	ENSDARP00000126544.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7DYL5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 5,427 bps, Translation length: 887 residues

Version

ENSDART00000151915.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.