Transcript: ENSDART00000151891.2 cadps2-204

Description

Ca++-dependent secretion activator 2 [Source:ZFIN;Acc:ZDB-GENE-030903-1]

Gene Synonyms

cpd2, zgc:110135

Location

Chromosome 25: 28,253,844-28,269,544 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 252 variant alleles and maps to 64 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000013312.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000023890.9	cadps2-201	1618	396aa	ENSDARP00000016385.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RCG6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000151854.3	cadps2-202	2572	629aa	ENSDARP00000126389.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000151994.3	cadps2-205	1811	483aa	ENSDARP00000126526.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000151891.2	cadps2-204	769	165aa	ENSDARP00000126895.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000151866.3	cadps2-203	539	106aa	ENSDARP00000126482.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000152036.2	cadps2-206	758	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 769 bps, Translation length: 165 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000151891.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000151891.2 cadps2-204

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Transcript: ENSDART00000151891.2 cadps2-204

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