Transcript: ENSDART00000151805.3 VAMP4-202

Description

vesicle-associated membrane protein 4 [Source:ZFIN;Acc:ZDB-GENE-040625-92]

Location

Chromosome 20: 14,968,031-15,001,305 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 14 domains and features, is associated with 580 variant alleles and maps to 106 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000043510.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000151805.3	VAMP4-202	681	227aa	ENSDARP00000125729.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000186424.1	VAMP4-205	2655	153aa	ENSDARP00000156743.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6P4N7	-
ENSDART00000190910.1	VAMP4-207	1639	140aa	ENSDARP00000148329.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6IQB0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000063874.7	VAMP4-206	1632	153aa	ENSDARP00000063873.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6P4N7	-
ENSDART00000151448.3	VAMP4-203	507	169aa	ENSDARP00000125798.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000151520.2	VAMP4-201	501	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000151751.2	VAMP4-204	505	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 681 bps, Translation length: 227 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000151805.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000151805.3 VAMP4-202

Summary

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Transcript: ENSDART00000151805.3 VAMP4-202

Summary

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