Transcript: ENSDART00000151674.3 pcdh9-202

Description

protocadherin 9 [Source:ZFIN;Acc:ZDB-GENE-091015-1]

Location

About this transcript

This transcript has 2 exons, is annotated with 68 domains and features, is associated with 255 variant alleles and maps to 135 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000186730.1	pcdh9-203	3942	1054aa	ENSDARP00000145020.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FBE3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000092290.6	pcdh9-201	3887	1054aa	ENSDARP00000086722.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FBE3	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000151674.3	pcdh9-202	3753	1012aa	ENSDARP00000125820.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 3,753 bps, Translation length: 1,012 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000151674.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not organism-supported [Definitions]