Transcript: ENSDART00000151477.2 cobll1a-201

Description

cordon-bleu WH2 repeat protein-like 1a [Source:ZFIN;Acc:ZDB-GENE-120215-171]

Gene Synonyms

si:dkey-43i4.1

Location

Chromosome 6: 10,333,928-10,341,969 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 3 domains and features, is associated with 393 variant alleles and maps to 19 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000089858.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000151667.3	cobll1a-202	2929	735aa	ENSDARP00000126238.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3ITH3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000186936.1	cobll1a-203	621	175aa	ENSDARP00000150091.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QE12	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000151477.2	cobll1a-201	494	83aa	ENSDARP00000126264.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3ITJ6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 494 bps, Translation length: 83 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000151477.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000151477.2 cobll1a-201

Summary

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Transcript: ENSDART00000151477.2 cobll1a-201

Summary

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