Transcript: ENSDART00000151255.2 trim36-205

Description

tripartite motif containing 36 [Source:ZFIN;Acc:ZDB-GENE-040426-2936]

Gene Synonyms

wu:fj48f01, zgc:153447, zgc:63476

Location

Chromosome 8: 404,810-410,728 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 25 domains and features, is associated with 195 variant alleles and maps to 35 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000062794.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000091177.6	trim36-201	3446	721aa	ENSDARP00000085610.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000122979.2	trim36-202	2214	695aa	ENSDARP00000110289.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000151331.2	trim36-206	1326	406aa	ENSDARP00000125739.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000151255.2	trim36-205	878	292aa	ENSDARP00000126165.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000151155.1	trim36-204	776	210aa	ENSDARP00000125921.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000150921.1	trim36-203	590	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 878 bps, Translation length: 292 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000151255.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000151255.2 trim36-205

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Transcript: ENSDART00000151255.2 trim36-205

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