Transcript: ENSDART00000151254.2 PTPRU-202

Description

protein tyrosine phosphatase receptor type Ua [Source:ZFIN;Acc:ZDB-GENE-060503-232]

Location

Chromosome 19: 16,595,332-16,633,462 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 15 domains and features, is associated with 422 variant alleles and maps to 36 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000092638.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000189521.1	PTPRU-205	8323	1478aa	ENSDARP00000150888.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QCZ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000169246.3	PTPRU-203	8305	1472aa	ENSDARP00000135347.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IMC4	-
ENSDART00000190583.1	PTPRU-204	8269	1460aa	ENSDARP00000154703.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QPI2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000137189.5	PTPRU-201	5837	1454aa	ENSDARP00000115841.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q6E0	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000151254.2	PTPRU-202	761	254aa	ENSDARP00000125962.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 761 bps, Translation length: 254 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000151254.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000151254.2 PTPRU-202

Summary

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Transcript: ENSDART00000151254.2 PTPRU-202

Summary

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