Transcript: ENSDART00000151175.2 TRA2A-203

Description

transformer 2 alpha homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1391]

Location

Chromosome 19: 20,179,080-20,187,218 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 13 domains and features, is associated with 351 variant alleles and maps to 75 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000007863.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000008595.11	TRA2A-204	1486	297aa	ENSDARP00000010426.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7T2A0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000166807.2	TRA2A-207	2920	298aa	ENSDARP00000129899.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000145115.4	TRA2A-202	984	200aa	ENSDARP00000126060.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000151175.2	TRA2A-203	809	200aa	ENSDARP00000126162.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000133873.2	TRA2A-201	1043	98aa	ENSDARP00000126113.1	Nonsense mediated decay	-	-
ENSDART00000145225.3	TRA2A-205	743	98aa	ENSDARP00000126020.1	Nonsense mediated decay	-	-
ENSDART00000143221.2	TRA2A-206	701	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 809 bps, Translation length: 200 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000151175.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000151175.2 TRA2A-203

Summary

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Transcript: ENSDART00000151175.2 TRA2A-203

Summary

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