Transcript: ENSDART00000151166.2 nectin1b-202

Description

nectin cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:9706]

Location

Chromosome 18: 43,183,749-43,226,503 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 10 domains and features, is associated with 1093 variant alleles and maps to 132 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000086034.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000084454.6	nectin1b-201	1620	539aa	ENSDARP00000078889.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000151166.2	nectin1b-202	1226	218aa	ENSDARP00000125946.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000151279.2	nectin1b-203	641	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 1,226 bps, Translation length: 218 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000151166.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000151166.2 nectin1b-202

Summary

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Transcript: ENSDART00000151166.2 nectin1b-202

Summary

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