Transcript: ENSDART00000150932.2 LPCAT1-201

Description

lysophosphatidylcholine acyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060503-915]

Location

Chromosome 19: 28,331,227-28,334,164 forward strand.

About this transcript

This transcript has 4 exons and maps to 75 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000011506.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000103855.6	LPCAT1-202	2050	517aa	ENSDARP00000094631.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LWG4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000163382.3	LPCAT1-206	2027	517aa	ENSDARP00000133893.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LWG4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139433.4	LPCAT1-205	798	236aa	ENSDARP00000120048.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000151752.3	LPCAT1-204	820	48aa	ENSDARP00000125633.1	Nonsense mediated decay	-	-
ENSDART00000150932.2	LPCAT1-201	668	130aa	ENSDARP00000125791.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000140038.2	LPCAT1-203	505	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 668 bps, Translation length: 130 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000150932.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000150932.2 LPCAT1-201

Summary

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Transcript: ENSDART00000150932.2 LPCAT1-201

Summary

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