Transcript: ENSDART00000150896.3 si:zfos-955e8.1-201

Description

si:zfos-955e8.1 [Source:ZFIN;Acc:ZDB-GENE-120215-103]

Location

About this transcript

This transcript has 4 exons, is annotated with 13 domains and features, is associated with 180 variant alleles and maps to 34 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000167596.3	si:zfos-955e8.1-204	1146	342aa	ENSDARP00000140115.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IVY0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000151149.3	si:zfos-955e8.1-202	557	148aa	ENSDARP00000125748.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000150896.3	si:zfos-955e8.1-201	540	148aa	ENSDARP00000126057.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000151557.2	si:zfos-955e8.1-203	802	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 540 bps, Translation length: 148 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000150896.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.