Transcript: ENSDART00000150195.2 srrm1-208

Description

serine/arginine repetitive matrix 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2789]

Gene Synonyms

wu:fb34f04, wu:fb38b06, zgc:63802

Location

Chromosome 17: 25,432,449-25,435,551 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 10 domains and features, is associated with 340 variant alleles and maps to 88 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000001244.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000149241.3	srrm1-204	3517	896aa	ENSDARP00000124762.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1PF75	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000121848.3	srrm1-201	3480	929aa	ENSDARP00000111346.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F1X7	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000150195.2	srrm1-208	848	283aa	ENSDARP00000123976.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000148856.3	srrm1-203	889	79aa	ENSDARP00000124575.1	Nonsense mediated decay	-	-
ENSDART00000149557.3	srrm1-205	803	238aa	ENSDARP00000124824.1	Nonsense mediated decay	-	-
ENSDART00000148483.2	srrm1-202	834	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000149790.2	srrm1-207	612	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000149747.3	srrm1-206	567	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 848 bps, Translation length: 283 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000150195.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000150195.2 srrm1-208

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000150195.2 srrm1-208

Summary

About Us

Get help

Our sister sites

Follow us