Transcript: ENSDART00000150159.3 usp25-201

Description

ubiquitin specific peptidase 25 [Source:ZFIN;Acc:ZDB-GENE-040426-2847]

Gene Synonyms

wu:fi33c05, wu:fo67e06, wu:fp97a04, zgc:55791

Location

About this transcript

This transcript has 24 exons, is annotated with 25 domains and features, is associated with 2621 variant alleles and maps to 268 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000150159.3	usp25-201	4049	1072aa	ENSDARP00000123830.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000166108.2	usp25-202	7474	1162aa	ENSDARP00000138813.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IQS2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 24, Coding exons: 24, Transcript length: 4,049 bps, Translation length: 1,072 residues

Version

ENSDART00000150159.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.