Transcript: ENSDART00000150080.3 rs1a-203

Description

retinoschisin 1a [Source:ZFIN;Acc:ZDB-GENE-040801-171]

Gene Synonyms

rs1, zgc:92703

Location

Chromosome 11: 30,244,411-30,251,569 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 9 domains and features, is associated with 223 variant alleles and maps to 60 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000027236.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000036050.8	rs1a-201	1325	230aa	ENSDARP00000034534.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DH01	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000150080.3	rs1a-203	715	180aa	ENSDARP00000124926.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W5Z1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000135375.2	rs1a-202	808	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 715 bps, Translation length: 180 residues

Version

ENSDART00000150080.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000150080.3 rs1a-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000150080.3 rs1a-203

Summary

About Us

Get help

Our sister sites

Follow us