Transcript: ENSDART00000149994.2 NELFA-201

Description

negative elongation factor complex member A [Source:ZFIN;Acc:ZDB-GENE-030131-6400]

Location

Chromosome 7: 24,496,894-24,502,740 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 14 domains and features, is associated with 290 variant alleles and maps to 65 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000061411.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000087568.8	NELFA-203	2228	542aa	ENSDARP00000082002.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FFE0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000172290.3	NELFA-204	5472	543aa	ENSDARP00000130626.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000149994.2	NELFA-201	784	261aa	ENSDARP00000124577.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000149881.4	NELFA-202	639	165aa	ENSDARP00000124962.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 784 bps, Translation length: 261 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000149994.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000149994.2 NELFA-201

Summary

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Transcript: ENSDART00000149994.2 NELFA-201

Summary

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