Transcript: ENSDART00000149965.2 lingo1a-202

Description

leucine rich repeat and Ig domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-080327-16]

Gene Synonyms

sc:d0342

Location

About this transcript

This transcript has 1 exon, is annotated with 29 domains and features, is associated with 178 variant alleles and maps to 140 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000149965.2	lingo1a-202	1860	619aa	ENSDARP00000124225.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W4D7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000041820.6	lingo1a-201	1848	615aa	ENSDARP00000041819.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QJ67	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 1,860 bps, Translation length: 619 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000149965.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.