Transcript: ENSDART00000149858.2 c4b-203

Description

complement C4B (Chido/Rodgers blood group) [Source:ZFIN;Acc:ZDB-GENE-100805-2]

Location

Chromosome 16: 16,665,854-16,666,757 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 57 variant alleles and maps to 90 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000038424.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000143550.3	c4b-202	5339	1725aa	ENSDARP00000115743.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000140270.3	c4b-201	866	154aa	ENSDARP00000135646.1	Nonsense mediated decay	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000149858.2	c4b-203	760	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 760 bps,

Version

ENSDART00000149858.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000149858.2 c4b-203

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Transcript: ENSDART00000149858.2 c4b-203

Summary

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