Transcript: ENSDART00000149826.3 slc38a4-202

Description

solute carrier family 38 member 4 [Source:ZFIN;Acc:ZDB-GENE-041010-14]

Gene Synonyms

wu:fd51c05, zgc:103694, zgc:113830

Location

About this transcript

This transcript has 4 exons, is associated with 481 variant alleles and maps to 13 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000067446.6	slc38a4-201	4956	538aa	ENSDARP00000067445.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5SPB0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000150198.2	slc38a4-203	232	39aa	ENSDARP00000124385.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W3J7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000149826.3	slc38a4-202	644	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 644 bps,

Version

ENSDART00000149826.3

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.