Transcript: ENSDART00000149585.3 atp2b1b-203

Description

ATPase plasma membrane Ca2+ transporting 1b [Source:ZFIN;Acc:ZDB-GENE-080409-1]

Gene Synonyms

pmca1b

Location

Chromosome 25: 19,627,644-19,655,820 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 15 domains and features, is associated with 43 variant alleles and maps to 126 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000007788.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000104353.5	atp2b1b-201	4711	1240aa	ENSDARP00000095128.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QBG4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000149585.3	atp2b1b-203	1292	345aa	ENSDARP00000124996.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W5S2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000149641.3	atp2b1b-204	765	116aa	ENSDARP00000124653.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W2P7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148570.2	atp2b1b-202	744	101aa	ENSDARP00000123725.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W5B4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000149889.2	atp2b1b-205	647	61aa	ENSDARP00000124753.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W2F0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,292 bps, Translation length: 345 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000149585.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000149585.3 atp2b1b-203

Summary

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Transcript: ENSDART00000149585.3 atp2b1b-203

Summary

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