Transcript: ENSDART00000149553.2 HMGCR-202

Description

3-hydroxy-3-methylglutaryl-CoA reductase a [Source:ZFIN;Acc:ZDB-GENE-040401-2]

Location

About this transcript

This transcript has 20 exons, is annotated with 51 domains and features, is associated with 659 variant alleles and maps to 202 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000097460.5	HMGCR-201	3895	884aa	ENSDARP00000088231.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9JSZ0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000192021.1	HMGCR-203	4304	912aa	ENSDARP00000153502.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000149553.2	HMGCR-202	2930	884aa	ENSDARP00000124862.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9JSZ0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 20, Coding exons: 19, Transcript length: 2,930 bps, Translation length: 884 residues

Version

ENSDART00000149553.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.