Transcript: ENSDART00000149542.2 pacsin1b-203

Description

protein kinase C and casein kinase substrate in neurons 1b [Source:NCBI gene;Acc:619246]

Gene Synonyms

fe25d06, pacsin1, syndapin I, wu:fe25d06, zgc:114042

Location

Chromosome 6: 54,239,625-54,256,607 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 7 domains and features, is associated with 12 variant alleles and maps to 14 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000042128.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000056830.6	pacsin1b-201	2622	445aa	ENSDARP00000056829.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GTA5 Q4V920	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000128456.4	pacsin1b-202	2663	445aa	ENSDARP00000107643.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GTA5 Q4V920	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000162469.2	pacsin1b-204	1352	445aa	ENSDARP00000136926.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GTA5 Q4V920	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000149542.2	pacsin1b-203	561	97aa	ENSDARP00000123765.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W574	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 561 bps, Translation length: 97 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000149542.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000149542.2 pacsin1b-203

Summary

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Transcript: ENSDART00000149542.2 pacsin1b-203

Summary

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