Transcript: ENSDART00000149494.3 sptlc2a-204

Description

serine palmitoyltransferase, long chain base subunit 2a [Source:ZFIN;Acc:ZDB-GENE-050522-23]

Gene Synonyms

sptlc2, zgc:110661

Location

About this transcript

This transcript has 13 exons, is associated with 1328 variant alleles and maps to 283 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000123350.3	sptlc2a-201	1878	558aa	ENSDARP00000109825.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QCX4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000149494.3	sptlc2a-204	2017	236aa	ENSDARP00000123952.1	Nonsense mediated decay	F8W491	-
ENSDART00000148488.2	sptlc2a-202	703	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000148521.2	sptlc2a-203	539	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 13, Coding exons: 5, Transcript length: 2,017 bps, Translation length: 236 residues

Version

ENSDART00000149494.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.