Transcript: ENSDART00000149407.2 itga6l-204

Description

integrin, alpha 6, like [Source:ZFIN;Acc:ZDB-GENE-040914-57]

Location

Chromosome 14: 41,531,937-41,535,822 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 10 domains and features, is associated with 421 variant alleles and maps to 13 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000056018.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000149244.3	itga6l-203	3432	1035aa	ENSDARP00000124589.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000074401.6	itga6l-201	7324	982aa	ENSDARP00000068890.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000188013.1	itga6l-205	7165	929aa	ENSDARP00000156657.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000149407.2	itga6l-204	723	117aa	ENSDARP00000125058.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000148558.2	itga6l-202	622	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 723 bps, Translation length: 117 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000149407.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000149407.2 itga6l-204

Summary

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Transcript: ENSDART00000149407.2 itga6l-204

Summary

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