Transcript: ENSDART00000149400.2 srsf5a-203

Description

serine and arginine rich splicing factor 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7336]

Location

Chromosome 13: 36,530,420-36,535,072 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 1 domain and feature, is associated with 18 variant alleles and maps to 154 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000029818.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000043312.5	srsf5a-201	1310	259aa	ENSDARP00000043311.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6TGT9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000181046.1	srsf5a-206	4722	290aa	ENSDARP00000147014.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000177857.2	srsf5a-205	4629	259aa	ENSDARP00000144432.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6TGT9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000187243.1	srsf5a-207	427	133aa	ENSDARP00000147482.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W2Y8	-
ENSDART00000149400.2	srsf5a-203	1514	133aa	ENSDARP00000124561.1	Nonsense mediated decay	F8W2Y8	-
ENSDART00000148384.3	srsf5a-202	2356	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000149607.2	srsf5a-204	715	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 9, Coding exons: 5, Transcript length: 1,514 bps, Translation length: 133 residues

Version

ENSDART00000149400.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000149400.2 srsf5a-203

Summary

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Transcript: ENSDART00000149400.2 srsf5a-203

Summary

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