Transcript: ENSDART00000149294.3 OTOF-201

Description

otoferlin b [Source:ZFIN;Acc:ZDB-GENE-110406-5]

Location

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 678 variant alleles and maps to 43 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000149773.3	OTOF-202	8070	1773aa	ENSDARP00000123935.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W4A8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000041685.8	OTOF-203	3708	1235aa	ENSDARP00000041684.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000149294.3	OTOF-201	540	180aa	ENSDARP00000123890.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 540 bps, Translation length: 180 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000149294.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.