Transcript: ENSDART00000149166.3 pals2a-203

Description

protein associated with LIN7 2, MAGUK p55 family member a [Source:NCBI gene (formerly Entrezgene);Acc:402878]

Location

Chromosome 16: 21,455,954-21,463,718 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 274 variant alleles and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000056892.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000146914.4	pals2a-201	5714	550aa	ENSDARP00000123608.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QKE3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000186017.1	pals2a-206	1949	550aa	ENSDARP00000151087.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QKE3	-
ENSDART00000186493.1	pals2a-207	1919	539aa	ENSDARP00000147717.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q1T2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000193081.1	pals2a-208	1847	539aa	ENSDARP00000144755.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q1T2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000149525.3	pals2a-204	925	251aa	ENSDARP00000123776.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148517.2	pals2a-202	674	118aa	ENSDARP00000123785.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000149166.3	pals2a-203	625	85aa	ENSDARP00000123881.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000150105.3	pals2a-205	789	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 625 bps, Translation length: 85 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000149166.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000149166.3 pals2a-203

Summary

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Transcript: ENSDART00000149166.3 pals2a-203

Summary

About Us

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