Transcript: ENSDART00000149077.3 TRUB1-204

Description

TruB pseudouridine (psi) synthase family member 1 [Source:ZFIN;Acc:ZDB-GENE-080723-73]

Location

About this transcript

This transcript has 7 exons, is associated with 235 variant alleles and maps to 106 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000075889.6	TRUB1-203	1197	290aa	ENSDARP00000070369.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DHG0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148847.3	TRUB1-202	892	258aa	ENSDARP00000123987.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000150220.2	TRUB1-201	400	133aa	ENSDARP00000124035.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000149077.3	TRUB1-204	973	89aa	ENSDARP00000124954.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 7, Coding exons: 3, Transcript length: 973 bps, Translation length: 89 residues

Version

ENSDART00000149077.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.