Transcript: ENSDART00000149042.3 si:dkey-87o1.2-201

Description

si:dkey-87o1.2 [Source:ZFIN;Acc:ZDB-GENE-110411-217]

Location

Chromosome 16: 17,714,664-17,719,700 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 14 domains and features, is associated with 95 variant alleles and maps to 117 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000095796.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000149042.3	si:dkey-87o1.2-201	877	189aa	ENSDARP00000124470.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W378	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000149596.2	si:dkey-87o1.2-203	889	164aa	ENSDARP00000124841.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W4X3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000149437.3	si:dkey-87o1.2-202	729	164aa	ENSDARP00000123855.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W4X3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 877 bps, Translation length: 189 residues

Version

ENSDART00000149042.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000149042.3 si:dkey-87o1.2-201

Summary

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Transcript: ENSDART00000149042.3 si:dkey-87o1.2-201

Summary

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