Transcript: ENSDART00000149030.3 nt5c3a-202

Description

5'-nucleotidase, cytosolic IIIA [Source:NCBI gene (formerly Entrezgene);Acc:321720]

Location

Chromosome 16: 7,217,046-7,228,276 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 6 domains and features, is associated with 335 variant alleles and maps to 175 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000058597.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000149260.3	nt5c3a-203	1826	331aa	ENSDARP00000124641.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000187916.1	nt5c3a-205	4285	285aa	ENSDARP00000151921.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32T9K4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000148992.3	nt5c3a-201	1256	367aa	ENSDARP00000124389.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000149030.3	nt5c3a-202	853	155aa	ENSDARP00000124279.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000149935.2	nt5c3a-204	601	147aa	ENSDARP00000124742.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 853 bps, Translation length: 155 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000149030.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000149030.3 nt5c3a-202

Summary

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Transcript: ENSDART00000149030.3 nt5c3a-202

Summary

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