Transcript: ENSDART00000148935.2 HDAC1-203

Description

histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]

Location

About this transcript

This transcript has 10 exons, is associated with 10 variant alleles and maps to 89 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000051799.6	HDAC1-202	2242	480aa	ENSDARP00000051798.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000186428.1	HDAC1-205	5435	484aa	ENSDARP00000155165.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QIW0	-
ENSDART00000164205.2	HDAC1-204	1439	472aa	ENSDARP00000133315.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000148935.2	HDAC1-203	1249	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000149128.2	HDAC1-201	849	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 1,249 bps,

Version

ENSDART00000148935.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.