Transcript: ENSDART00000148873.2 tcf3a-202

Description

transcription factor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-51]

Gene Synonyms

E2A, Tcf3b, e12, tcf3, zfe12, zgc:113926

Location

Chromosome 2: 57,317,508-57,344,037 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 9 domains and features, is associated with 618 variant alleles and maps to 42 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000005915.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000020529.9	tcf3a-201	2406	570aa	ENSDARP00000010044.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R3L1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000149235.3	tcf3a-203	1197	324aa	ENSDARP00000124171.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W4Q7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148873.2	tcf3a-202	763	255aa	ENSDARP00000124777.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W2C6	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000149884.2	tcf3a-204	799	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000150122.2	tcf3a-205	489	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 763 bps, Translation length: 255 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000148873.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000148873.2 tcf3a-202

Summary

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Transcript: ENSDART00000148873.2 tcf3a-202

Summary

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