Transcript: ENSDART00000148847.3 trub1-202

Description

TruB pseudouridine (psi) synthase family member 1 [Source:ZFIN;Acc:ZDB-GENE-080723-73]

Gene Synonyms

zgc:195155

Location

About this transcript

This transcript has 7 exons, is annotated with 8 domains and features, is associated with 233 variant alleles and maps to 107 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000075889.6	trub1-201	1197	290aa	ENSDARP00000070369.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DHG0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148847.3	trub1-202	892	258aa	ENSDARP00000123987.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W456	-
ENSDART00000150220.2	trub1-204	400	133aa	ENSDARP00000124035.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W3T9	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000149077.3	trub1-203	973	89aa	ENSDARP00000124954.1	Nonsense mediated decay	F8W5W3	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 892 bps, Translation length: 258 residues

Version

ENSDART00000148847.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.