Transcript: ENSDART00000148839.2 arhgef25b-202

Description

Rho guanine nucleotide exchange factor (GEF) 25b [Source:ZFIN;Acc:ZDB-GENE-080225-17]

Location

Chromosome 6: 39,267,046-39,270,851 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 330 variant alleles and maps to 22 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000014465.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000148531.3	arhgef25b-201	2240	625aa	ENSDARP00000124252.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FF78	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000180477.1	arhgef25b-203	1878	625aa	ENSDARP00000152536.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FF78	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148839.2	arhgef25b-202	716	239aa	ENSDARP00000124934.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 716 bps, Translation length: 239 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000148839.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000148839.2 arhgef25b-202

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Transcript: ENSDART00000148839.2 arhgef25b-202

Summary

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