Transcript: ENSDART00000148770.2 si:rp71-19m20.1-203

Description

si:rp71-19m20.1 [Source:ZFIN;Acc:ZDB-GENE-030131-3509]

Location

About this transcript

This transcript has 3 exons, is annotated with 3 domains and features, is associated with 408 variant alleles and maps to 19 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000129495.4	si:rp71-19m20.1-201	2365	364aa	ENSDARP00000112326.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FEM4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000185209.1	si:rp71-19m20.1-204	1077	358aa	ENSDARP00000156361.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000148770.2	si:rp71-19m20.1-203	470	128aa	ENSDARP00000124768.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000148545.2	si:rp71-19m20.1-202	622	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 470 bps, Translation length: 128 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000148770.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.