Transcript: ENSDART00000148728.3 pacsin2-201

Description

protein kinase C and casein kinase substrate in neurons 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2596]

Gene Synonyms

zgc:77519

Location

Chromosome 4: 77,933,084-77,954,402 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 26 domains and features, is associated with 462 variant alleles and maps to 129 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000078014.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000148728.3	pacsin2-201	2327	490aa	ENSDARP00000124182.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QC13	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000159094.2	pacsin2-205	3120	491aa	ENSDARP00000133109.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IHF0	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000149305.3	pacsin2-202	619	206aa	ENSDARP00000123946.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W497	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000149636.2	pacsin2-203	578	191aa	ENSDARP00000124620.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W2S9	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000150099.2	pacsin2-204	372	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 2,327 bps, Translation length: 490 residues

Version

ENSDART00000148728.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000148728.3 pacsin2-201

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Transcript: ENSDART00000148728.3 pacsin2-201

Summary

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